General

Is Illumina BaseSpace free?

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Is Illumina BaseSpace free?

BaseSpace offers a limited 30-day free trial for new accounts. New free trial accounts have access to the following features. 1 TB free storage—Additional storage can be purchased with promotional iCredits.

What is Illumina BaseSpace?

What is BaseSpace? BaseSpace is a powerful website where biologists and informaticians can easily store, analyze, and share genetic data. Sequencing data from Illumina instruments, including MiSeq and HiSeq, are streamed in real-time over the Internet to BaseSpace.

What is BaseSpace sequence hub?

BaseSpace Sequence Hub is a cloud environment for analysis, storage, and sharing of genomics data. Stream data directly from your sequencing run and then use apps to analyze that data. BaseSpace apps perform alignment, variant calling, data classification and visualization, and interpretation of results.

How do I download data from BaseSpace?

How to download data from Run

  1. Choose Run. Select the “Runs” icon and select the desired run.
  2. Download. Select the “Download Run” button.
  3. Download. Select the “Download” button.
  4. Choose Data Option. Select the desired data option. If SAV data is needed, that option is selected.

How do I download Fastq BaseSpace?

Click the desired sample in the Samples pane. In the Files pane, select the checkboxes for the desired FASTQ files. Click the Download Selected button. The BaseSpace Downloader guides you through the download process, and starts the download of the files to the desired location.

How do I transfer data from BaseSpace?

You can use this method to migrate data from a private account to a Professional or Enterprise workgroup. New owners must have a BaseSpace Sequence Hub account….Transfer Ownership

  1. Select the project or run to transfer.
  2. Select Share, point to Transfer, and then select Transfer Ownership.

What does Fastq stand for?

FASTQ format is a text-based format for storing both a biological sequence (usually nucleotide sequence) and its corresponding quality scores. Both the sequence letter and quality score are each encoded with a single ASCII character for brevity. FASTQ format. Internet media type. text/plain, chemical/seq-na-fastq.

What is Clarity LIMS?

Clarity LIMS, an innovative laboratory information management. system (LIMS) (Figure 1). BaseSpace Clarity LIMS enables labs to run. samples more quickly, track them effortlessly, and achieve or maintain. regulatory compliance efficiently.

How can I download Illumina data?

Download Data Sets

  1. Select the My Data drop-down menu, and then select Biosamples.
  2. Select the desired biosample.
  3. Select the Datasets tab.
  4. [Optional] Select a data set name to view a list of file details.
  5. Select the checkboxes for the desired data sets.

How do I upload a FASTQ file to BaseSpace?

If you are uploading a FASTQ file, do as follows.

  1. Select Select Biosample, then select or create a biosample that the FASTQ dataset will be associated with.
  2. Enter a library name.
  3. Select a prep kit.
  4. [Optional] Enter a position name.
  5. Select Finish Upload.

What is FastQC tool?

FastQC, written by Simon Andrews of Babraham Bioinformatics, is a very popular tool used to provide an overview of basic quality control metrics for raw next generation sequencing data. There are a number different analyses (called modules) that may be performed on a sequence data set.

What is the difference between FASTA and FASTQ?

FASTA (officially) just stores the name of a sequence and the sequence, unofficially people also add comment fields after the name of the sequence. FASTQ was invented to store both sequence and associated quality values (e.g. from sequencing instruments).